Par0025 - elastix

Registration Description

intra-subject, longitudinal data; rigid + affine + B-spline transformation, advanced normalized correlation metric with a transform bending energy penalty

Image data

Screen shot:

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An example of a mouse brain dataset co-registered to the template: on the left you see the used template.

Registration Settings

For parameter files see the Elastix Model Zoo repository on GitHub.

elastix version: 4.500

Description:

All subjects/time-points were registered to the template. So, the template was used as the fixed image. A fixed image mask was always used.

Command line call:

elastix -f FixedImage_i.mhd -m MovingImage_j.mhd -fMask FixedImageMask_i -p par0025.txt -out outputdir

with: = one of {rigid, affine, bspline}

Published in

[1] L. Hammelrath, S. Škokić, A. Khmelinski, A. Hess, N. van der Knaap, M. Staring, B.P.F. Lelieveldt, D. Wiedermann, M. Hoehn, "Morphological maturation of the mouse brain: an in vivo MRI and histology investigation," NeuroImage, 2015

© 2020 Viktor van der Valk