Model Zoo

A Model Zoo for parameter files used for image registration with Elastix, SimpleElastix or ITKElastix in various domains. Parameter files can be uploaded via the GitHub repository.

Par0035

intra-subject, inter-subject; mono-modal and multi-modal; rigid, affine and B-spline transformations; mean square difference, normalized correlation, mutual information

Brain Abdomen Chest/Lung 3D 4D CT Ultrasound MRI

Par0012

motion estimation; (cyclic) B-spline transformation; variance over last dimension

Carotid Cardiac Chest/Lung 3D 4D CT MRI Ultrasound

Par0056

inter and intra-subject; rigid + affine transformation

Chest/Lung X-Ray Ultrasound

Name	Image Properties	Description	Paper
Par0035	Brain Abdomen Chest/Lung 3D 4D CT Ultrasound MRI	intra-subject, inter-subject; mono-modal and multi-modal; rigid, affine and B-spline transformations; mean square difference, normalized correlation, mutual information	Y. Qiao, B. van Lew, B.P.F. Lelieveldt and M. Staring, "Fast Automatic Step Size Estimation for Gradient Descent Optimization of Image Registration," IEEE Transactions on Medical Imaging, in press.
Par0012	Carotid Cardiac Chest/Lung 3D 4D CT MRI Ultrasound	motion estimation; (cyclic) B-spline transformation; variance over last dimension	Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, C.T. Metz, S. Klein, M. Schaap, T. van Walsum and W.J. Niessen, Medical Image Analysis, in press](http://dx.doi.org/10.1016/j.media.2010.10.003)
Par0056	Chest/Lung X-Ray Ultrasound	inter and intra-subject; rigid + affine transformation	D. van Berlo, A. Khmelinskii, A. Gasparini, F. J. Salguero, B. Floot, N. de Wit, M. van de Ven, J. Y. Song, R. P. Coppes, M. Verheij, J. J. Sonke and C. Vens, "Micro Cone Beam Computed Tomography for sensitive assessment of radiation-induced late lung toxicity in preclinical models," accepted, Radiotherapy & Oncology, 2019](https://www.sciencedirect.com/science/article/pii/S0167814019304062?via%3Dihub)