| Par0040 |
3D MRI |
intra-subject; affine transformation, mutual information metric
|
None |
| Par0002 |
Brain 3D PET MRI |
interpatient; several transformation models; localised mutual information
|
S. Klein, M. Staring, K. Murphy, M.A. Viergever, J.P.W. Pluim, "`elastix`: a toolbox for intensity based medical image registration," IEEE Transactions on Medical Imaging, vol. 29, no. 1, pp. 196-205, 2010.
|
| Par0022 |
Cervix 3D MRI |
intrapatient; rigid + B-spline transformation; statistical shape regularization
|
F.F. Berendsen et al., Free-form image registration regularized by a statistical shape model: application to organ segmentation in cervical MR, Comput. Vis. Image Understand. (2013),
|
| Par0030 |
MRI |
inter patient; Affine + B-spline transformation; normalized cross correlation. intra patient; Rigid transformation; mutual information
|
: https://github.com/SuperElastix/ElastixModelZoo/raw/master/models/Par0030/Pre11.png
|
| Par0042 |
MRI |
inter-subject; rigid + B-spline transformation, advanced normalized correlation metric
|
None |
| Par0039 |
Brain Carotid Abdomen 2D 3D 4D MRI |
intra-subject; affine or B-spline transformation; groupwise registration; PCA metrics
|
/j.media.2015.12.004 PCA-based groupwise image registration for quantitative MRI, W. Huizinga, D.H.J. Poot, J.-M. Guyader, R. Klaassen, B.F. Coolen, M. van Kranenburg, R.J.M. van Geunse, A. Uitterdijk, M. Polfliet, J. Vandemeulebroucke, A. Leemans, W.J. Niessena, S. Klein, Medical Image Analysis, in press]
|
| Par0035 |
Brain Abdomen Chest/Lung 3D 4D CT Ultrasound MRI |
intra-subject, inter-subject; mono-modal and multi-modal; rigid, affine and B-spline transformations; mean square difference, normalized correlation, mutual information
|
Y. Qiao, B. van Lew, B.P.F. Lelieveldt and M. Staring, "Fast Automatic Step Size Estimation for Gradient Descent Optimization of Image Registration," IEEE Transactions on Medical Imaging, in press.
|
| Par0010 |
Brain 3D MRI |
interpatient; affine + B-spline transformation; mutual information
|
S. Klein, M. Loog, F. van der Lijn, T. den Heijer, A. Hammers, M. de Bruijne, A. van der Lugt, R.P.W. Duin, M.M.B. Breteler and W.J. Niessen, Early diagnosis of dementia based on intersubject whole-brain dissimilarities, Proceedings of IEEE International Symposium on Biomedical Imaging: from Nano to Macro, 2010.
|
| Par0009 |
Brain 3D MRI |
interpatient; B-spline transformation; mutual information
|
Artaechevarria X, Munoz-Barrutia A, Ortiz-de-Solorzano C., "Combination strategies in multi-atlas image segmentation: application to brain MR data," IEEE Trans Med Imaging. 2009 Aug;28(8):1266-77.
|
| Par0059 |
Pelvis 3D CT MRI |
Intrapatient, B-spline transformation, mutual information, rigidity penalty
|
Florkow et al. (2019), Deep learning-based MR-to-CT synthesis: the influence of varying gradient echo-based MR images as input channels, under submission
|
| Par0012 |
Carotid Cardiac Chest/Lung 3D 4D CT MRI Ultrasound |
motion estimation; (cyclic) B-spline transformation; variance over last dimension
|
Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, C.T. Metz, S. Klein, M. Schaap, T. van Walsum and W.J. Niessen, Medical Image Analysis, in press](http://dx.doi.org/10.1016/j.media.2010.10.003)
|
| Par0001 |
Prostate 3D MRI |
interpatient; affine + B-spline transformation; mutual information
|
S. Klein, M. Staring, K. Murphy, M.A. Viergever, J.P.W. Pluim, "`elastix`: a toolbox for intensity based medical image registration," IEEE Transactions on Medical Imaging, vol. 29, no. 1, pp. 196-205, 2010.
|
| Par0023 |
Head & Neck CT MRI PET |
intrapatient; rigid + B-spline transformation; localized mutual information combined with bending energy penalty
|
S. Leibfarth , D. Mönnich, S. Welz, C. Siegel, N. Schwenzer, H. Schmidt, D. Zips, D. Thorwarth, A strategy for multimodal deformable image registration to integrate PET/MR into radiotherapy treatment planning, Acta Oncologica 52, 1353-1359 (2013)
|
| Par0026 |
Brain 3D MRI |
intra-subject, longitudinal data; rigid + affine + B-spline transformation
|
L. Hammelrath, A. Khmelinskii, C. Po, E. Pracht, H. Endepols, H. Backes, C. Schäfer, M. Staring, B.P.F. Lelieveldt and M. Hoehn, "," _in preparation_, 2016
|
| Par0048 |
3D MRI |
intra-subject; B-spline transformation; Mattes mutual information
|
G. Abreu-Vieira*, J. Burakiewicz*, L.G.M. Janssen, K.J. Nahon, M.R. Boon, O. Dzyubachyk, A.G. Webb, H.E. Kan, P.C.N. Rensen. "Human brown adipose tissue lipid mapping by MRI and its heterogenic changes in volume, mass and energy content after cold exposure"
|
| Par0043 |
Prostate Pelvis 3D CT MRI |
intra-subject; multi-resolution (4), rigid, Mutual Information metric (Mattes) with Adaptive Stochastic Gradient Descent optimizer
|
Maspero M, et al. (2017), Quantification of confounding factors in MRI-based dose calculations as applied to prostate IMRT. Phys Med Biol. 62(3)
|
| Par0027 |
Head & Neck CT MRI PET |
intra patient; rigid + B-spline transformation; mutual information, multi parametric mutual information
|
V. Fortunati, R.F. Verhaart, F. Angeloni, A. van der Lugt, W.J. Niessen, J.F. Veenland, M.M. Paulides and T. van Walsum, Feasibility of Multimodal Deformable Registration for Head and Neck Tumor Treatment Planning, Int. J. Radiation Oncology Biology and physics 90, 85-93 (2014)
|
| Par0061 |
Pelvis 3D MRI |
Intrapatient, rigid transformation
|
Werensteijn-Honingh et al. (2020), Impact of a vacuum cushion on intrafraction motion during online adaptive MR-guided SBRT, submitted.
|
| Par0018 |
Carotid 2D 3D MRI |
interpatient; several transformation models; mutual information based similarity metrics
|
Automatic Registration of Multispectral MR Vessel Wall Images of the Carotid Artery R. van 't Klooster, M. Staring, S. Klein, R.M. Kwee, M.E. Kooi, J. H. C. Reiber, B.P.F. Lelieveldt and R.J. van der Geest, International Society for Magnetic Resonance in Medicine, 2012
|
| Par0051 |
MRI |
inter-subject; similarity + B-spline transformation, advanced normalized correlation metric
|
None |
| Par0033 |
Brain 3D MRI |
inter-subject; rigid + affine + B-spline transformation; mutual information metric with a transform bending energy penalty
|
D.I. Bink, K. Ritz, C. Mackaaij, A. Khmelinskii, O.J. de Boer, L.M. Gierman, J.C. Sluimer, L. van der Weerd, M.J.A.P. Daemen, "Neuropathology in mouse models for atherosclerosis," _Submitted_ 2016]
|
| Par0025 |
Brain 3D MRI |
intra-subject, longitudinal data; rigid + affine + B-spline transformation, advanced normalized correlation metric with a transform bending energy penalty
|
L. Hammelrath, S. Škokić, A. Khmelinski, A. Hess, N. van der Knaap, M. Staring, B.P.F. Lelieveldt, D. Wiedermann, M. Hoehn, "Morphological maturation of the mouse brain: an _in vivo_ MRI and histology investigation," NeuroImage, 2015](http://www.sciencedirect.com/science/article/pii/S1053811915009039)
|
| Par0041 |
MRI |
inter-subject; similarity + B-spline transformation, advanced normalized correlation metric
|
None |
| Par0020 |
Brain 3D MRI |
intra-subject, longitudinal data; rigid + affine + B-spline transformation, advanced normalized correlation metric with a transform bending energy penalty
|
A. Khmelinskii, L. Mengler, P. Kitslaar, M. Staring, M. Hoehn and B.P.F. Lelieveldt, "A visualization platform for high-throughput, follow-up, co-registered multi-contrast MRI rat brain data," SPIE Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging, Proceedings of SPIE, vol. 8672, pp. 86721W–86721W-7, February 2013](http://proceedings.spiedigitallibrary.org/proceeding.aspx?articleid=1674633)
|
| Par0029 |
Abdomen 3D MRI |
intra patient; B-spline transformation; mutual information
|
J.-M. Guyader, L. Bernardin, N. H. M. Douglas, D. H. J. Poot, W. J. Niessen, S. Klein, Influence of image registration on apparent diffusion coefficient images computed from free-breathing diffusion MR images of the abdomen, Journal of Magnetic Resonance in Medicine, 2014
|
| Par0034 |
Brain MRI |
inter-subject; rigid + affine + B-spline transformation; advanced normalized correlation + mutual information metric with a transform bending energy penalty
|
D.I. Bink _et al.,_ "," _in preparation_ 2016]
|
| Par0057 |
Liver 4D MRI |
intra-subject; Rigid transformation; B-spline transformation
|
Jansen et al. (2019) Liver segmentation and metastases detection in MR images using convolutional neural networks (submitted)
|
| Par0055 |
Prostate 3D MRI |
intra-subject cine-MRI motion; rigid transformation
|
de Muinck Keizer DM, Kerkmeijer LG, Maspero M, Andreychenko A, van Zyp JV, Van den Berg CA, Raaymakers BW, Lagendijk JJ, de Boer JC. Soft-tissue prostate intrafraction motion tracking in 3D cine-MR for MR-guided radiotherapy. Physics in Medicine & Biology. 2019 Dec 5;64(23):235008. doi:[https://doi.org/10.1088/1361-6560/ab5539](https://doi.org/10.1088/1361-6560/ab5539).
|
| Par0021 |
Brain MRI |
Registration optimisation for subject-FA images to FA template, multiple data sources
|
M. de Groot, M.W. Vernooij, M.A. Ikram, F Vos, S.M. Smith, W.J. Niessen and J. Andersson, Improving alignment in Tract-based spatial statistics: Evaluation and optimization of image registration., NeuroImage 76, 400-411
|
| Par0005 |
Cervix 3D MRI |
intrapatient; rigid + B-spline transformation; multi-feature α-mutual information
|
M. Staring, U.A. van der Heide, S. Klein, M.A. Viergever and J.P.W. Pluim, Registration of Cervical MRI Using Multifeature Mutual Information, IEEE Transactions on Medical Imaging, vol. 28, no. 9, pp. 1412 - 1421, September 2009.
|
| Par0060 |
Abdomen Head & Neck 2D MRI |
Intapatient, rigid+ affine+ b-spline transformation, mutual information
|
Terpstra ML, Maspero M, D'Agata F, Stemkens B, Intven MP, Lagendijk JJ, Van den Berg CA, Tijssen RH. Deep learning-based image reconstruction and motion estimation from undersampled radial k-space for real-time MRI-guided radiotherapy. Physics in Medicine & Biology. 2020 July 30; 66(15). doi:[https://doi.org/10.1088/1361-6560/ab9358](https://doi.org/10.1088/1361-6560/ab9358).
|
| Par0050 |
3D MRI |
intra-subject; affine transformation, mutual information metric
|
None |
| Par0047 |
Abdomen Liver 4D MRI |
intra-subject; B-spline transformation; groupwise registration; PCA metric
|
M. J. A. Jansen, H. J. Kuijf, W. B. Veldhuis, F. J. Wessels, M. van Leeuwen, and J. P. W. Pluim, " Evaluation of motion correction for clinical dynamic contrast enhanced MRI of the liver," Phys. Med. Biol., 62(19), pp. 7556–7568, 2017.
|
| Par0032 |
3D MRI |
intrapatient; rigid + B-spline transformation; mutual information
|
A. Gubern-Mérida; R. Marti; J. Melendez; J. Hauth; R. Mann; N. Karssemeijer and B. Platel. "Automated localization of breast cancer in DCE-MRI", Medical Image Analysis 2015;20:265-274.
|
| Par0024 |
Cervix 3D MRI |
interpatient; rigid + B-spline transformation; missing structure penalty
|
F.F. Berendsen et al., Registration of structurally dissimilar images in MRI-based brachytherapy, Phys. Med. Biol. 59 (2014) 4033-4045.
|
| Par0052 |
3D MRI |
inter-subject; Longitudinal Data, affine + B-spline transformation
|
Mehrabian H., Lu Y., Richmond L., Martel, A.L., [Deformable registration for longitudinal breast MRI screening][2], Journal of Digital Imaging (2018). doi.org/10.1007/s10278-018-0063-1
|
| Par0064 |
Brain 3D MRI |
interpatient; affine transform; mutual information
|
Paper to be published, reference will be added at a later time.
|
| Par0062 |
MRI |
This multi-step registration is used to register follow-up images to the reference MRI. Patients are... |
None |
| Par0017 |
Knee 3D MRI |
intrapatient; rigid; localized mutual information
|
E.E. Bron, J. van Tiel, H. Smit, D.H.J. Poot, W.J. Niessen, G. P. Krestin, H. Weinans, E. Oei, G. Kotek and S. Klein, Image registration improves human knee cartilage T1 mapping with delayed gadolinium-enhanced MRI of cartilage (dGEMRIC), European Radiology, in press_
|
| Par0036 |
2D MRI |
intra-subject, inter-station; affine; normalized correlation
|
O. Dzyubachyk, M. Staring, M. Reijnierse, B.P.F. Lelieveldt, and R.J. van der Geest. "Inter-Station Intensity Standardization for Whole-Body MR Data", Magnetic Resonance in Medicine 2017;77(1):422–433.](https://www.frontiersin.org/articles/10.3389/fninf.2017.00003/full)
|
| Par0038 |
Brain 3D MRI |
intra-subject, longitudinal data; rigid + affine + B-spline transformation, advanced normalized correlation metric with a transform bending energy penalty
|
I.A. Mulder*, A. Khmelinskii*, O. Dzyubachyk*, N. Rieff, S. de Jong, M.J.H. Wermer, M. Hoehn, B.P.F. Lelieveldt, A.M.J.M. van den Maagdenberg, "Automated ischemic lesion segmentation in MRI mouse brain data after transient middle cerebral artery occlusion," Front. Neuroinform, Vol. 11, Issue 3, January 2017](https://www.frontiersin.org/articles/10.3389/fninf.2017.00003/full)
|
Model Zoo