Model Zoo

A Model Zoo for parameter files used for image registration with Elastix, SimpleElastix or ITKElastix in various domains. Parameter files can be uploaded via the GitHub repository.

Par0039

intra-subject; affine or B-spline transformation; groupwise registration; PCA metrics

Brain Carotid Abdomen 2D 3D 4D MRI

Par0035

intra-subject, inter-subject; mono-modal and multi-modal; rigid, affine and B-spline transformations; mean square difference, normalized correlation, mutual information

Brain Abdomen Chest/Lung 3D 4D CT Ultrasound MRI

Par0012

motion estimation; (cyclic) B-spline transformation; variance over last dimension

Carotid Cardiac Chest/Lung 3D 4D CT MRI Ultrasound

Par0057

intra-subject; Rigid transformation; B-spline transformation

Liver 4D MRI

Par0047

intra-subject; B-spline transformation; groupwise registration; PCA metric

Abdomen Liver 4D MRI

Par0007

intrapatient; B-spline transformation; mutual information

Chest/Lung 4D CT

Name	Image Properties	Description	Paper
Par0039	Brain Carotid Abdomen 2D 3D 4D MRI	intra-subject; affine or B-spline transformation; groupwise registration; PCA metrics	/j.media.2015.12.004 PCA-based groupwise image registration for quantitative MRI, W. Huizinga, D.H.J. Poot, J.-M. Guyader, R. Klaassen, B.F. Coolen, M. van Kranenburg, R.J.M. van Geunse, A. Uitterdijk, M. Polfliet, J. Vandemeulebroucke, A. Leemans, W.J. Niessena, S. Klein, Medical Image Analysis, in press]
Par0035	Brain Abdomen Chest/Lung 3D 4D CT Ultrasound MRI	intra-subject, inter-subject; mono-modal and multi-modal; rigid, affine and B-spline transformations; mean square difference, normalized correlation, mutual information	Y. Qiao, B. van Lew, B.P.F. Lelieveldt and M. Staring, "Fast Automatic Step Size Estimation for Gradient Descent Optimization of Image Registration," IEEE Transactions on Medical Imaging, in press.
Par0012	Carotid Cardiac Chest/Lung 3D 4D CT MRI Ultrasound	motion estimation; (cyclic) B-spline transformation; variance over last dimension	Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, C.T. Metz, S. Klein, M. Schaap, T. van Walsum and W.J. Niessen, Medical Image Analysis, in press](http://dx.doi.org/10.1016/j.media.2010.10.003)
Par0057	Liver 4D MRI	intra-subject; Rigid transformation; B-spline transformation	Jansen et al. (2019) Liver segmentation and metastases detection in MR images using convolutional neural networks (submitted)
Par0047	Abdomen Liver 4D MRI	intra-subject; B-spline transformation; groupwise registration; PCA metric	M. J. A. Jansen, H. J. Kuijf, W. B. Veldhuis, F. J. Wessels, M. van Leeuwen, and J. P. W. Pluim, " Evaluation of motion correction for clinical dynamic contrast enhanced MRI of the liver," Phys. Med. Biol., 62(19), pp. 7556–7568, 2017.
Par0007	Chest/Lung 4D CT	intrapatient; B-spline transformation; mutual information	K. Ding, J.E. Bayouth, J.M. Buatti, G.E Christensen, and J.M. Reinhardt, 4DCT-Based Measurement of Radiation Induced Changes in Pulmonary Function, submitted.

Name

Image Properties

Description

Paper

Par0039

Brain Carotid Abdomen 2D 3D 4D MRI

intra-subject; affine or B-spline transformation; groupwise registration; PCA metrics

/j.media.2015.12.004 PCA-based groupwise image registration for quantitative MRI, W. Huizinga, D.H.J. Poot, J.-M. Guyader, R. Klaassen, B.F. Coolen, M. van Kranenburg, R.J.M. van Geunse, A. Uitterdijk, M. Polfliet, J. Vandemeulebroucke, A. Leemans, W.J. Niessena, S. Klein, Medical Image Analysis, in press]

Par0035

Brain Abdomen Chest/Lung 3D 4D CT Ultrasound MRI

intra-subject, inter-subject; mono-modal and multi-modal; rigid, affine and B-spline transformations; mean square difference, normalized correlation, mutual information

Y. Qiao, B. van Lew, B.P.F. Lelieveldt and M. Staring, "Fast Automatic Step Size Estimation for Gradient Descent Optimization of Image Registration," IEEE Transactions on Medical Imaging, in press.

Par0012

Carotid Cardiac Chest/Lung 3D 4D CT MRI Ultrasound

motion estimation; (cyclic) B-spline transformation; variance over last dimension

Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, C.T. Metz, S. Klein, M. Schaap, T. van Walsum and W.J. Niessen, Medical Image Analysis, in press](http://dx.doi.org/10.1016/j.media.2010.10.003)

Par0057

Liver 4D MRI

intra-subject; Rigid transformation; B-spline transformation

Jansen et al. (2019) Liver segmentation and metastases detection in MR images using convolutional neural networks (submitted)

Par0047

Abdomen Liver 4D MRI

intra-subject; B-spline transformation; groupwise registration; PCA metric

M. J. A. Jansen, H. J. Kuijf, W. B. Veldhuis, F. J. Wessels, M. van Leeuwen, and J. P. W. Pluim, " Evaluation of motion correction for clinical dynamic contrast enhanced MRI of the liver," Phys. Med. Biol., 62(19), pp. 7556–7568, 2017.

Par0007

Chest/Lung 4D CT

intrapatient; B-spline transformation; mutual information

K. Ding, J.E. Bayouth, J.M. Buatti, G.E Christensen, and J.M. Reinhardt, 4DCT-Based Measurement of Radiation Induced Changes in Pulmonary Function, submitted.