elastixLogo.gif Model Zoo

A Model Zoo for parameter files used for image registration with Elastix, SimpleElastix or ITKElastix in various domains. Parameter files can be uploaded via the GitHub repository.

Par0037

intra-subject; translational registration; mutual information

Chest/Lung CT
Par0035

intra-subject, inter-subject; mono-modal and multi-modal; rigid, affine and B-spline transformations; mean square difference, normalized correlation, mutual information

Brain Abdomen Chest/Lung 3D 4D CT Ultrasound MRI
Par0011

intrapatient (sometimes intra-sheep); B-spline transformation; normalized correlation

Chest/Lung 3D CT
Par0012

motion estimation; (cyclic) B-spline transformation; variance over last dimension

Carotid Cardiac Chest/Lung 3D 4D CT MRI Ultrasound
Par0008

intrapatient; B-spline transformation; mutual information

Chest/Lung 3D CT
Par0049

intra-subject; B-spline transformation; Mattes mutual information

Chest/Lung 3D CT
Par0056

inter and intra-subject; rigid + affine transformation

Chest/Lung X-Ray Ultrasound
Par0058

Head-neck, lung and breast cancer patients acquired between 2016-2018. ...

Head & Neck Chest/Lung CT
Par0004

intrapatient; rigid + B-spline transformation; mutual information

Chest/Lung 3D CT
Par0016

intrapatient; Multi B-spline transformation; sliding motion

Chest/Lung 3D CT
Par0054

intra-subject respiratory motion; B-spline transformation

Chest/Lung 3D CT
Par0015

intrapatient; B-spline transformation; several similarity metrics

Chest/Lung 3D CT
Par0007

intrapatient; B-spline transformation; mutual information

Chest/Lung 4D CT
Par0003

interpatient; affine + B-spline transformation; mutual information

Chest/Lung 3D CT
Name Image Properties Description Paper
Par0037 Chest/Lung CT intra-subject; translational registration; mutual information You Zhang, Fang-Fang Yin, Irina Vergalasova, Lei Ren, "Pilot Clinical Study of Orthogonal-view Phase-matched Digital Tomosynthesis for Lung Tumor Localization" _in preparation_ 2015]
Par0035 Brain Abdomen Chest/Lung 3D 4D CT Ultrasound MRI intra-subject, inter-subject; mono-modal and multi-modal; rigid, affine and B-spline transformations; mean square difference, normalized correlation, mutual information Y. Qiao, B. van Lew, B.P.F. Lelieveldt and M. Staring, "Fast Automatic Step Size Estimation for Gradient Descent Optimization of Image Registration," IEEE Transactions on Medical Imaging, in press.
Par0011 Chest/Lung 3D CT intrapatient (sometimes intra-sheep); B-spline transformation; normalized correlation Marius Staring, Stefan Klein, Johan H.C. Reiber, Wiro J. Niessen and Berend C. Stoel, Pulmonary Image Registration With `elastix` Using a Standard Intensity-Based Algorithm, EMPIRE10 workshop at MICCAI.
Par0012 Carotid Cardiac Chest/Lung 3D 4D CT MRI Ultrasound motion estimation; (cyclic) B-spline transformation; variance over last dimension Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, C.T. Metz, S. Klein, M. Schaap, T. van Walsum and W.J. Niessen, Medical Image Analysis, in press](http://dx.doi.org/10.1016/j.media.2010.10.003)
Par0008 Chest/Lung 3D CT intrapatient; B-spline transformation; mutual information K. Murphy, B. van Ginneken, J.P.W. Pluim, S. Klein, and M. Staring, Semi-Automatic Reference Standard Construction for Quantitative Evaluation of Lung CT Registration, in MICCAI, ser. Lecture Notes in Computer Science, vol. 5242, 2008, pp. 1006 – 1013.
Par0049 Chest/Lung 3D CT intra-subject; B-spline transformation; Mattes mutual information Sokooti, et al. (2017), Accuracy Estimation for Medical Image Registration Using Regression Forests.
Par0056 Chest/Lung X-Ray Ultrasound inter and intra-subject; rigid + affine transformation D. van Berlo, A. Khmelinskii*, A. Gasparini*, F. J. Salguero, B. Floot, N. de Wit, M. van de Ven, J. Y. Song, R. P. Coppes, M. Verheij, J. J. Sonke and C. Vens, "Micro Cone Beam Computed Tomography for sensitive assessment of radiation-induced late lung toxicity in preclinical models," accepted, Radiotherapy & Oncology, 2019](https://www.sciencedirect.com/science/article/pii/S0167814019304062?via%3Dihub)
Par0058 Head & Neck Chest/Lung CT Head-neck, lung and breast cancer patients acquired between 2016-2018. ... Maspero M, Houweling AC, Savenije MH, van Heijst TC, Verhoeff JJ, Kotte AN, van den Berg CA. A single neural network for cone-beam computed tomography-based radiotherapy of head-and-neck, lung and breast cancer. Physics and Imaging in Radiation Oncology. 2020 Apr 1;14:24-31. doi:[https://doi.org/10.1016/j.phro.2020.04.002](https://doi.org/10.1016/j.phro.2020.04.002);
Par0004 Chest/Lung 3D CT intrapatient; rigid + B-spline transformation; mutual information M. Staring, S. Klein and J.P.W. Pluim, "A Rigidity Penalty Term for Nonrigid Registration," Medical Physics, vol. 34, no. 11, pp. 4098 - 4108, November 2007.
Par0016 Chest/Lung 3D CT intrapatient; Multi B-spline transformation; sliding motion V. Delmon, S. Rit, R. Pinho, and D. Sarrut, "Direction dependent B-splines decomposition for the registration of sliding objects", Proceedings of the Fourth International Workshop on Pulmonary Image Analysis, Toronto, Canada, pp. 45–55, 09/2011.][1]
Par0054 Chest/Lung 3D CT intra-subject respiratory motion; B-spline transformation Christopher L. Guy, Elizabeth Weiss, Gary E. Christensen, Nuzhat Jan, and Geoffrey D. Hugo, "CALIPER: A deformable image registration algorithm for large geometric changes during radiotherapy for locally advanced non-small cell lung cancer," Medical Physics, 45 (6), June 2018. doi.org/10.1002/mp.12891
Par0015 Chest/Lung 3D CT intrapatient; B-spline transformation; several similarity metrics M. Staring, M.E. Bakker, J. Stolk, D.P. Shamonin, J.H.C. Reiber, and B.C. Stoel, "Towards Local Progression Estimation of Pulmonary Emphysema using CT", Medical Physics, vol. 41, no. 2, pp. 021905-1 - 021905-13, 2014.
Par0007 Chest/Lung 4D CT intrapatient; B-spline transformation; mutual information K. Ding, J.E. Bayouth, J.M. Buatti, G.E Christensen, and J.M. Reinhardt, 4DCT-Based Measurement of Radiation Induced Changes in Pulmonary Function, submitted.
Par0003 Chest/Lung 3D CT interpatient; affine + B-spline transformation; mutual information S. Klein, M. Staring, K. Murphy, M.A. Viergever, J.P.W. Pluim, "`elastix`: a toolbox for intensity based medical image registration," IEEE Transactions on Medical Imaging, vol. 29, no. 1, pp. 196-205, 2010.

© 2020 Viktor van der Valk