Model Zoo

A Model Zoo for parameter files used for image registration with Elastix, SimpleElastix or ITKElastix in various domains. Parameter files can be uploaded via the GitHub repository.

Par0039

intra-subject; affine or B-spline transformation; groupwise registration; PCA metrics

Brain Carotid Abdomen 2D 3D 4D MRI

Par0012

motion estimation; (cyclic) B-spline transformation; variance over last dimension

Carotid Cardiac Chest/Lung 3D 4D CT MRI Ultrasound

Par0018

interpatient; several transformation models; mutual information based similarity metrics

Carotid 2D 3D MRI

Name	Image Properties	Description	Paper
Par0039	Brain Carotid Abdomen 2D 3D 4D MRI	intra-subject; affine or B-spline transformation; groupwise registration; PCA metrics	/j.media.2015.12.004 PCA-based groupwise image registration for quantitative MRI, W. Huizinga, D.H.J. Poot, J.-M. Guyader, R. Klaassen, B.F. Coolen, M. van Kranenburg, R.J.M. van Geunse, A. Uitterdijk, M. Polfliet, J. Vandemeulebroucke, A. Leemans, W.J. Niessena, S. Klein, Medical Image Analysis, in press]
Par0012	Carotid Cardiac Chest/Lung 3D 4D CT MRI Ultrasound	motion estimation; (cyclic) B-spline transformation; variance over last dimension	Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, C.T. Metz, S. Klein, M. Schaap, T. van Walsum and W.J. Niessen, Medical Image Analysis, in press](http://dx.doi.org/10.1016/j.media.2010.10.003)
Par0018	Carotid 2D 3D MRI	interpatient; several transformation models; mutual information based similarity metrics	Automatic Registration of Multispectral MR Vessel Wall Images of the Carotid Artery R. van 't Klooster, M. Staring, S. Klein, R.M. Kwee, M.E. Kooi, J. H. C. Reiber, B.P.F. Lelieveldt and R.J. van der Geest, International Society for Magnetic Resonance in Medicine, 2012