Model Zoo

A Model Zoo for parameter files used for image registration with Elastix, SimpleElastix or ITKElastix in various domains. Parameter files can be uploaded via the GitHub repository.

Par0039

intra-subject; affine or B-spline transformation; groupwise registration; PCA metrics

Brain Carotid Abdomen 2D 3D 4D MRI

Par0035

intra-subject, inter-subject; mono-modal and multi-modal; rigid, affine and B-spline transformations; mean square difference, normalized correlation, mutual information

Brain Abdomen Chest/Lung 3D 4D CT Ultrasound MRI

Par0029

intra patient; B-spline transformation; mutual information

Abdomen 3D MRI

Par0060

Intapatient, rigid+ affine+ b-spline transformation, mutual information

Abdomen Head & Neck 2D MRI

Par0047

intra-subject; B-spline transformation; groupwise registration; PCA metric

Abdomen Liver 4D MRI

Name	Image Properties	Description	Paper
Par0039	Brain Carotid Abdomen 2D 3D 4D MRI	intra-subject; affine or B-spline transformation; groupwise registration; PCA metrics	/j.media.2015.12.004 PCA-based groupwise image registration for quantitative MRI, W. Huizinga, D.H.J. Poot, J.-M. Guyader, R. Klaassen, B.F. Coolen, M. van Kranenburg, R.J.M. van Geunse, A. Uitterdijk, M. Polfliet, J. Vandemeulebroucke, A. Leemans, W.J. Niessena, S. Klein, Medical Image Analysis, in press]
Par0035	Brain Abdomen Chest/Lung 3D 4D CT Ultrasound MRI	intra-subject, inter-subject; mono-modal and multi-modal; rigid, affine and B-spline transformations; mean square difference, normalized correlation, mutual information	Y. Qiao, B. van Lew, B.P.F. Lelieveldt and M. Staring, "Fast Automatic Step Size Estimation for Gradient Descent Optimization of Image Registration," IEEE Transactions on Medical Imaging, in press.
Par0029	Abdomen 3D MRI	intra patient; B-spline transformation; mutual information	J.-M. Guyader, L. Bernardin, N. H. M. Douglas, D. H. J. Poot, W. J. Niessen, S. Klein, Influence of image registration on apparent diffusion coefficient images computed from free-breathing diffusion MR images of the abdomen, Journal of Magnetic Resonance in Medicine, 2014
Par0060	Abdomen Head & Neck 2D MRI	Intapatient, rigid+ affine+ b-spline transformation, mutual information	Terpstra ML, Maspero M, D'Agata F, Stemkens B, Intven MP, Lagendijk JJ, Van den Berg CA, Tijssen RH. Deep learning-based image reconstruction and motion estimation from undersampled radial k-space for real-time MRI-guided radiotherapy. Physics in Medicine & Biology. 2020 July 30; 66(15). doi:[https://doi.org/10.1088/1361-6560/ab9358](https://doi.org/10.1088/1361-6560/ab9358).
Par0047	Abdomen Liver 4D MRI	intra-subject; B-spline transformation; groupwise registration; PCA metric	M. J. A. Jansen, H. J. Kuijf, W. B. Veldhuis, F. J. Wessels, M. van Leeuwen, and J. P. W. Pluim, " Evaluation of motion correction for clinical dynamic contrast enhanced MRI of the liver," Phys. Med. Biol., 62(19), pp. 7556–7568, 2017.

Name

Image Properties

Description

Paper

Par0039

Brain Carotid Abdomen 2D 3D 4D MRI

intra-subject; affine or B-spline transformation; groupwise registration; PCA metrics

/j.media.2015.12.004 PCA-based groupwise image registration for quantitative MRI, W. Huizinga, D.H.J. Poot, J.-M. Guyader, R. Klaassen, B.F. Coolen, M. van Kranenburg, R.J.M. van Geunse, A. Uitterdijk, M. Polfliet, J. Vandemeulebroucke, A. Leemans, W.J. Niessena, S. Klein, Medical Image Analysis, in press]

Par0035

Brain Abdomen Chest/Lung 3D 4D CT Ultrasound MRI

intra-subject, inter-subject; mono-modal and multi-modal; rigid, affine and B-spline transformations; mean square difference, normalized correlation, mutual information

Y. Qiao, B. van Lew, B.P.F. Lelieveldt and M. Staring, "Fast Automatic Step Size Estimation for Gradient Descent Optimization of Image Registration," IEEE Transactions on Medical Imaging, in press.

Par0029

Abdomen 3D MRI

intra patient; B-spline transformation; mutual information

J.-M. Guyader, L. Bernardin, N. H. M. Douglas, D. H. J. Poot, W. J. Niessen, S. Klein, Influence of image registration on apparent diffusion coefficient images computed from free-breathing diffusion MR images of the abdomen, Journal of Magnetic Resonance in Medicine, 2014

Par0060

Abdomen Head & Neck 2D MRI

Intapatient, rigid+ affine+ b-spline transformation, mutual information

Terpstra ML, Maspero M, D'Agata F, Stemkens B, Intven MP, Lagendijk JJ, Van den Berg CA, Tijssen RH. Deep learning-based image reconstruction and motion estimation from undersampled radial k-space for real-time MRI-guided radiotherapy. Physics in Medicine & Biology. 2020 July 30; 66(15). doi:[https://doi.org/10.1088/1361-6560/ab9358](https://doi.org/10.1088/1361-6560/ab9358).

Par0047

Abdomen Liver 4D MRI

intra-subject; B-spline transformation; groupwise registration; PCA metric

M. J. A. Jansen, H. J. Kuijf, W. B. Veldhuis, F. J. Wessels, M. van Leeuwen, and J. P. W. Pluim, " Evaluation of motion correction for clinical dynamic contrast enhanced MRI of the liver," Phys. Med. Biol., 62(19), pp. 7556–7568, 2017.